BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB020E05LP1|AL427628
(633 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig532 1143 0.0
>3x_Contig532
Length = 2251
Score = 1143 bits (570), Expect = 0.0
Identities = 612/633 (96%)
Strand = Plus / Minus
Query: 1 ggtatttcttccagtgacacttgtgtstgatgtttctcttgctggggtaccctctttcac 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 862 ggtatttcttccagtgacacttgtgtgtgatgtttctcttgctggggtaccctctttcac 803
Query: 61 cttcycggatscacgaagcttaccggcgtaataatcatccstgatgtttttaccatctac 120
|||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 802 cttcccggatgcacgaagcttaccggcgtaataatcatccgtgatgtttttaccatctac 743
Query: 121 aacaaccttggctccgaattytcggaacacactccttgcagtaactagcgcaatgattct 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 742 aacaaccttggctccgaattctcggaacacactccttgcagtaactagcgcaatgattct 683
Query: 181 gtttytgtacgaatagggcaatacaccatttttgatgagattgtctctctctgattgcga 240
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 682 gtttctgtacgaatagggcaatacaccatttttgatgagatcgtctctctctgattgcga 623
Query: 241 gataatcaatttgtataggtttggatggtactggaagaacaagtatgagtctctgaaccc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 gataatcaatttgtataggtttggatggtactggaagaacaagtatgagtctctgaaccc 563
Query: 301 aacggcaagggctggctcagtagaaagcatgtatttaamttcacctctggaaggtaccgt 360
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 562 aacggcacgggctggctcagtagaaagcatgtatttaacttcacctctggaaggtaccgt 503
Query: 361 gaaagttctgactacaaattgtcttytctctagaagatwaccatttttggtgatcttggt 420
||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||
Sbjct: 502 gaaagttctgactacaaattgtcttccctctagaagatcaccattcttggtgatcttggt 443
Query: 421 ttcaccctmtggatcctcaggtaatgaatactcgttattyataattgggtatggagaccc 480
|||||||| |||||||||||||||||||||||||| ||| | ||||||||||||||||||
Sbjct: 442 ttcaccctctggatcctcaggtaatgaatactcgtcattcacaattgggtatggagaccc 383
Query: 481 gttttcgttcactgggtaaggtagtttctgtcttaagggatcgttcaaatcttcttctct 540
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gttttcgtccactgggtacggtagtttctgtcttaagggatcgttcaaatcttcttctct 323
Query: 541 tttcctctttgaaggccttcctcttgtcgctagtaccaatggaacaggtgtgctcgaagc 600
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 322 tttcctctttgaaggccttcctcttgtcgctagtaccactggaacaggtgtgctcgaagc 263
Query: 601 ggccttgcgcttggaangagatggtttaccctc 633
|||||||||||||||| ||||||||||||||||
Sbjct: 262 ggccttgcgcttggaacgagatggtttaccctc 230
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.39 0.713 1.32
Gapped
Lambda K H
1.39 0.713 1.32
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3431
Number of Sequences: 1807
Number of extensions: 3431
Number of successful extensions: 84
Number of sequences better than 1.0e-20: 1
length of query: 633
length of database: 10,358,551
effective HSP length: 16
effective length of query: 617
effective length of database: 10,329,639
effective search space: 6373387263
effective search space used: 6373387263
T: 0
A: 40
X1: 5 (10.0 bits)
X2: 14 (28.1 bits)
S1: 12 (24.6 bits)
S2: 50 (100.8 bits)